PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G10440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 437aa    MW: 44677.8 Da    PI: 7.5008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G10440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09264311455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OPUNC11G10440.1 264 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 311
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17258328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-11258315No hitNo description
PROSITE profilePS5088815.802260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17260327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAHDGFLGGG SFHALAAWPL PFDAAGAALH GGGWDSEPAL GELVPSPVGL LVAGGGGVHE  60
AALMDELASR LGGVCGGLGG GGVPSPPSSR YASCYSTPVG SPCKPAPAPA PPVPSLLAAA  120
DAMIAERAAR MSCLAAGGPG CGKLSRVASS QSLLAEPEMA AAAGGVRQLP GSDGSTSDAP  180
CRKRKGPGAK AKGKDAATAI AKSPELGTKA KKCKMSADAA GGEDTKPVPG EAGHGGNGKG  240
KDVAGDTPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDA SEPSMPAPLS LPPPPPPLSY  360
SPEGASLAIC YASSQGKAMQ SMVTRTKHLE MAPTFANHHV IPVPSLDGFH SANSQAGSCM  420
WEDDLQSVVQ MGFRGNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465230.0AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBankAK2889700.0AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615633.10.0transcription factor BHLH089-like isoform X2
TrEMBLA0A0E0MF510.0A0A0E0MF51_ORYPU; Uncharacterized protein
STRINGOPUNC11G10440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-53bHLH family protein