PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G16560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 453aa    MW: 47559.4 Da    PI: 5.8477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G16560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16269314555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  OPUNC10G16560.1 269 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 314
                      *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-19267335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-18269322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-18269318No hitNo description
SMARTSM003531.2E-18270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNQCVPSWDL DDPVGGAGLN GGGGHRVVSG GAGGFMPVAV PTSDQYYEVA ELTWEKGNIS  60
SHGLLLNRPA PSKYHPPQQQ QQAAIGGGGG GGGVVGDRET LEAVVGEAAA RSSSSHLAAR  120
PMPVPVAPWL GVGVAADALV PCARGVVDVD AAEEGRSKRP RVVVGEDGRA CASQGSAAPG  180
RGESTLLTLD ACGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRGMC  240
DEEEHVVIKG EGTMRSSIST KRSRAAAIHN ESERKRRDRI NQKMKTLQKL VPNSSKTDKA  300
SMLDEVIDYL KQLQAQVQVM SRMGSMMMPM GMAMPQLQMS VMAQMAQMAQ IGLSMMNMGQ  360
AGGYAGLTPP MMHTPPFLPV SWDAAASSSA ADRPPQPTGA ATSDAFSAFL ACQAAQQNAQ  420
QPNGMEAYNR MMAMCQKLNH HQQQQDQPSN SRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.10.0transcription factor UNE10 isoform X1
RefseqXP_015612717.10.0transcription factor UNE10 isoform X1
TrEMBLA0A0E0MAL50.0A0A0E0MAL5_ORYPU; Uncharacterized protein
STRINGOPUNC10G16560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-39bHLH family protein