PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G06730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 541aa MW: 60067.7 Da PI: 5.9789 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 428.9 | 3.9e-131 | 171 | 540 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++++++c +av+++d +l++ l+++l +++s +gdp+qRl ay++e+L arl++s+s lyk+l+++e + sse +++++l++e++P++kf+ OPUNC10G06730.1 171 LKQVIIACGKAVAENDVRLTELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICPFFKFG 261 57899****************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++ +s + l +g rL k+A+++g+pfefn+ v + OPUNC10G06730.1 262 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWMTLIQALAARPGGPPFLRITGIDDLNSAyaRGGGLDIVGMRLYKVAQSFGLPFEFNA-VPAAS 354 *******************************************************999899999************************.79999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++ le+L+++ gE+++Vn+++qlh+++desvs+e++rd+++++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ OPUNC10G06730.1 355 HEVYLEHLDIRVGEVIVVNFAYQLHHTPDESVSTENHRDRIIRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDK 448 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r++ E+++++r+ivn++acegaer+erhe ++kW++r+++aGF+p+pls+ +++++k+ll++++s yr+ee++g l+lgWk+r Lv+ SaW OPUNC10G06730.1 449 RRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARFTMAGFQPYPLSSVVNNTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 540 *****************************************************************65.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.07 | 145 | 522 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-128 | 171 | 540 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MSARASNHAY ICSDDSQMPY YNNSVPSGGN GRFYITQNHQ DTHYASSDDG SQKIGSSPQA 60 FEAQYCTLES SSANGVHPAH SSASSHSISP ISGSPLSHHD SHSDHTYNSP PSASCVTEIT 120 DLQVKLRELE NAILGPELDI AYDSPESALQ PNIMATPENW RQLLGINTGD LKQVIIACGK 180 AVAENDVRLT ELLISELGQM VSVSGDPLQR LGAYMLEGLV ARLSSSGSML YKSLKCKEPT 240 SSELMSYMHL LYEICPFFKF GYMSANGAIA EAIKGENFVH IIDFQIAQGS QWMTLIQALA 300 ARPGGPPFLR ITGIDDLNSA YARGGGLDIV GMRLYKVAQS FGLPFEFNAV PAASHEVYLE 360 HLDIRVGEVI VVNFAYQLHH TPDESVSTEN HRDRIIRMVK SLSPRLVTLV EQESNTNTRP 420 FFPRYLETLD YYTAMFESID VALPRDDKRR MSAEQHCVAR DIVNLIACEG AERVERHEVF 480 GKWKARFTMA GFQPYPLSSV VNNTIKTLLH TYNSFYRLEE RDGVLYLGWK NRVLVVSSAW 540 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-56 | 173 | 540 | 6 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC113335 | 0.0 | AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614551.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015614552.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A0E0M702 | 0.0 | A0A0E0M702_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G06730.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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