PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 282aa    MW: 30521.9 Da    PI: 8.0683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09101148455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OPUNC08G19200.1 101 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 148
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.05E-1095152No hitNo description
SuperFamilySSF474591.28E-1695162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1697160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.30197147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKDAANAKKR KAAAAGGGKG KGKEAPVGEE KESDGKRSKT GDGERKESSV KPKAEQAGSD  60
SSVEDGGGGG QKQGKGKNAK PVEPPKDYVH VRARRGQATD SHSLAERVRR ERISQRMKVL  120
QDLVPGCNKV IGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPLDFSNLP TLLQKDMFQA  180
CGPSASSVFS LESSNSAFPF AEQGDVFQQF AQNSMESQCT LNQLDLALSQ ATNAAQYAFQ  240
DGTAGANLQQ RNFWEDDLQS VFHIENGQSQ ENGVSAPNFH GW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720410.0AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
GenBankHQ8588690.0HQ858869.1 Oryza sativa Japonica Group isolate UT1678 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695672.11e-177PREDICTED: transcription factor bHLH78-like, partial
TrEMBLA0A0E0LX330.0A0A0E0LX33_ORYPU; Uncharacterized protein
STRINGOPUNC08G19200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.28e-55bHLH family protein