PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G13730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 359aa    MW: 37759.1 Da    PI: 5.1585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G13730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14137183354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  OPUNC08G13730.1 137 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 183
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-13137186No hitNo description
PfamPF000104.2E-12137183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16138204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15138196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.0E-4228278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWEGGVVDHG GDGTALLPWL GPAAAANTSA APLYMPPVVA AAAAPFVGEL PAEEPFEGGY  60
FDGGGGGVAG HNHHHHHQYG MFGMEAAAPP VMMMQMGGGG SSSSSRMVSG LLGTLQAELG  120
RMTAKEIMDA KALAASRSHS EAERRRRQRI NGHLARLRSL LPNTTKTDKA SLLAEVIEHV  180
KELKRQTSAM MEDTGEAAAS PLLLPTEDDE LDVDAAADEE GRLVARASLC CEDRADLIPD  240
IARALAALRL RARRAEIATL GGRVRSVLLI AAVEEDDADE GSDDDDDEHS YGGEVRGVAT  300
SHRRHELVAS IQEALRGVMD RKAASSDTSS SGGGGGGSIK RQRMISAHEL QGSFNSSGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.11e-135transcription factor bHLH30
TrEMBLA0A0E0LV540.0A0A0E0LV54_ORYPU; Uncharacterized protein
STRINGOPUNC08G13730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-40bHLH family protein