PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G11440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 563aa    MW: 61969.8 Da    PI: 8.2466
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G11440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR20.97.3e-071481731642
              TCR  16 kYCeCfaagkkCseeCkCedCkNkeek 42 
                      +YCeCf++g++C   C+C++C+N+ ++
  OPUNC08G11440.1 148 MYCECFEKGRYCIG-CNCTNCCNNVNH 173
                      8*************.********9875 PP
2TCR45.91.1e-14216256141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf++ ++Cse+C C++CkN ++
  OPUNC08G11440.1 216 KHTKGCKCKRTECLKKYCECFKSSVFCSENCGCTGCKNYKS 256
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163427.759134256IPR005172CRC domain
SMARTSM011140.039141173IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011148.9E-15216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.3E-11219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEKPLQLRPG SVKIDFASAL YAGKADISAT AAALSHALGP PRTPPCYQLP LTKVNSSLPL  60
WPPVICPSTF AQKRLMSLPN PPPAKKLQVQ QSSSMLPQAF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQG SPKMERPLLP RPATFIDMYC ECFEKGRYCI GCNCTNCCNN VNHENARQDA  180
INVALERNPA AFMPKVSNST AHNCESKAAE GLIVGKHTKG CKCKRTECLK KYCECFKSSV  240
FCSENCGCTG CKNYKSNEDR SSQHNTVHAH HEQNPASSGM VGHSVIIFHA AENDSSLSLA  300
ASDLSYSLTS SVTREDAKSL VKYVPHEVTY RPSLADIIQI EDVNELCNLL ILVSRQAGAA  360
LSESGIKENT KRKKLNRAES CLSSTNHDRE AIQKEPAKQM CSLLKSSNEV LIAEGRLELP  420
RADPFDIQKC NKRPLSPGTQ ALMCDEQDAV FQDSKDPDAT PSTTEENLVD IFKEQEKRVL  480
TNFRDYLCKL ATCGRLQELK LSSASTNCSE QASADNGNDS SITTVAKHRA LMITISVDKK  540
HVMPTYLAYD YNFIPGIKKE HGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-201362629129Protein lin-54 homolog
5fd3_B3e-201362629129Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0LUA90.0A0A0E0LUA9_ORYPU; Uncharacterized protein
STRINGOPUNC08G11440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.27e-50Tesmin/TSO1-like CXC domain-containing protein