PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G21640.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 264aa MW: 29518.2 Da PI: 6.9574

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G21640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.8e-05	35	75	1	45
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 +r ++erE+ Rd+ N+ f eL ll ++ + + Ka +L OPUNC07G21640.1 35 KRIHKSEREKLKRDKQNDLFTELGNLLEPD----RQNNGKACVLG 75 68899**********************996....34455555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-11	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-8	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-4	32	89	No hit	No description
PROSITE profile	PS50888	11.071	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MVPRDRVNAA GGGGVEGRLV QSGIVNKKCD KKAPKRIHKS EREKLKRDKQ NDLFTELGNL 60 LEPDRQNNGK ACVLGETTRI LKDLLSQVES LRKENNALKN ESHYVALERN ELHDDNSMLR 120 NEILELQNEL RTQMEGNPVW SHVNARPALS VPYPTTGVFP VQHLPHLPVT TTAAFPQQQP 180 VIIEQHYVAT PRELQLFPES ATSEDSEPSQ EHGISDQVTR PQARYPTPTV TMPVNLFPVL 240 PGRQDQQCSS GTTVTSEEGR IGRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070963	0.0	AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645391.1	1e-174	transcription factor BHLH062-like
Refseq	XP_015645393.1	1e-174	transcription factor BHLH062-like
Swissprot	Q69V10	1e-176	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0LNN5	0.0	A0A0E0LNN5_ORYPU; Uncharacterized protein
STRING	OPUNC07G21640.1	0.0	(Oryza punctata)
STRING	OPUNC07G21720.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-32	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]