PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G20160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 222aa MW: 22809.3 Da PI: 6.6782 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 184.7 | 7e-58 | 18 | 113 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+eplk+yl+k+releg OPUNC07G20160.1 18 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEPLKLYLHKFRELEG 111 89******************************************************************************************** PP NF-YB 96 ek 97 ek OPUNC07G20160.1 112 EK 113 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-54 | 16 | 131 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-40 | 20 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.2E-28 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-20 | 51 | 69 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 54 | 70 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-20 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 1.3E-20 | 89 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPDSDNESGG PGELASAREQ DRFLPIANVS RIMKKALPAN AKISKDAKET VQECVSEFIS 60 FITGEASDKC QREKRKTING DDLLWAMTTL GFEDYIEPLK LYLHKFRELE GEKAIGAGAG 120 AASSGASGSG SGSQYQQDAS RNNGGYGMYG GAGAGGGGGG GMIMMMGQPM YGSPPASAGY 180 AQPPPPHHHQ MVMGGKGGYG HGGGGGGGGP SPSSGYGRQD RL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-51 | 16 | 108 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288037 | 1e-165 | AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK111621 | 1e-165 | AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence. | |||
GenBank | AK112118 | 1e-165 | AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence. | |||
GenBank | AP005193 | 1e-165 | AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06. | |||
GenBank | AP006458 | 1e-165 | AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06. | |||
GenBank | AP014963 | 1e-165 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657935.1 | 4e-91 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | Q69J40 | 2e-85 | NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | A0A0E0LN39 | 1e-158 | A0A0E0LN39_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G20160.1 | 1e-159 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-71 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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