PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G10870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 211aa MW: 24096.9 Da PI: 4.7457 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.5 | 7.2e-11 | 73 | 111 | 5 | 43 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 ++t++q+++Le++Fe++ y+ ++r +LAkklg++erq OPUNC07G10870.1 73 KRHTDDQIKQLESVFERCTYLGGNQRVKLAKKLGMEERQ 111 579***********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 52 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.27E-8 | 59 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.7E-4 | 68 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.99E-9 | 70 | 111 | No hit | No description |
Pfam | PF00046 | 3.4E-8 | 73 | 111 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQMPMNQFRS NTRNQLIMDN GSQQQSSNLH VLDHPLASVI GVEDRVETDD AAVNYYDDGS 60 EGQDEATSNK RMKRHTDDQI KQLESVFERC TYLGGNQRVK LAKKLGMEER QMHDEHQEGM 120 WLQEENDVLH AENKVLKEAI WANICFTCGS SVVPTIPTIQ WRYLSFQNMR LADELQHATA 180 VFNMVAEDAD VDLPPVSPLT HFKGKGPYDT Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004298 | 1e-87 | AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09. | |||
GenBank | AP005690 | 1e-87 | AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14. | |||
GenBank | AP014963 | 1e-87 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-87 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0LJU9 | 1e-159 | A0A0E0LJU9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G10870.1 | 1e-160 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 3e-19 | homeodomain GLABROUS 1 |