PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC06G25950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 325aa MW: 33161.7 Da PI: 8.4101 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 223 | 6.2e-69 | 94 | 251 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskk.qsalsstk 90 g++sCqdCGnqakkdC+h+RCRtCCksrgf CathvkstWvpaakrrerqqqlaa+ + aaa++ a+aaskr+rel + + +++t OPUNC06G25950.1 94 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFACATHVKSTWVPAAKRRERQQQLAALFRGAAANNsaaaaAAAASKRPRELVRSLgRLPSANTA 187 5789****************************************************99999888778877888999999984433033334444 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +++++ ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+G+++ OPUNC06G25950.1 188 MVATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPAD 251 45555555667778***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.7E-65 | 96 | 250 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.6E-27 | 98 | 140 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.8E-20 | 201 | 249 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MAGFPLGGGS HSRDNPAPPV PPVHPSDAAS FLYATRGGSF QLWQQQEQQP PPFYASNIIR 60 FADDAPPAPS LAGASSSSSS RGMRSSGGGG GGGGGGISCQ DCGNQAKKDC THMRCRTCCK 120 SRGFACATHV KSTWVPAAKR RERQQQLAAL FRGAAANNSA AAAAAAASKR PRELVRSLGR 180 LPSANTAMVA TTTSSGEGDG RFPPELSVEA VFRCVRIGAV DEADAELAYQ TAVSIGGHTF 240 KGILRDHGPA DEAAGQLPPS SAEYHQLTGQ GREESSPAGS SEGVGGGGHG AATAATSAAV 300 LMDPYPTPIG AFAAGTQFFP HNPRT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241285 | 0.0 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. | |||
GenBank | AP005314 | 0.0 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. | |||
GenBank | AP005567 | 0.0 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642175.1 | 1e-133 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_025881792.1 | 1e-133 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 3e-61 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0E0LG11 | 0.0 | A0A0E0LG11_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G25950.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51060.1 | 5e-56 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|