PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G22420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 593aa MW: 65676.2 Da PI: 6.8884 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 45 | 65 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ OPUNC06G22420.1 45 ECNMYKM-GFCPNGPNCRYKHV 65 6666666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.01 | 14 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.596 | 14 | 39 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-4 | 46 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04146 | 3.9E-44 | 187 | 321 | IPR007275 | YTH domain |
PROSITE profile | PS50882 | 57.421 | 187 | 322 | IPR007275 | YTH domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK MGFCPNGPNC 60 RYKHVKLPGP PPPVEEVLQK ILQIRSFNKF NQHRHNNYNQ QGERPQHPQG SGLPNQNTID 120 NTTTTTAQPA VGQQAQTTNQ QPPQQQQQQQ QQQQQQKPNT NDQVQSVPNG SSNQATRIAT 180 PLPQGPSRYF IVKSCNRENL EISVQQGIWA TQRSNEAKLN EAFESIENVI LIFSINRTRN 240 FQGCAKMTSR IGGYIGGGNW KSAHGTAHYG RNFSIQWLKL CELSFQKTHH LRNPYNDNLP 300 VKISRDCQEL EPFIGEQLAS LLYLEPDSEL TAILIAAEAK KEEEKAKGVS ADEGADNQDI 360 VLFDDNEEEE EEESEEEEEG NGQESQGRGR GRGMMWPPQM PMLRGVGPMM GGRGFPPNMM 420 GDGFGFGGGF GMPDPFGVPR GFPPFGGPRF PGDFARGGPM PGMVFPGRPP QPGGMFPMGL 480 EMMMGPGRGP LMGGMGMGGP GRPNRPVGMA PFMPPPPPPN NRGTKREQRR PGGERGDRYE 540 TTSDQGSRGH DATGNSGAEG ARSQSGDRYG RSALRDDDSE SDEEAAPRRS RKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zuu_A | 1e-104 | 172 | 350 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_B | 1e-104 | 172 | 350 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_C | 1e-104 | 172 | 350 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_D | 1e-104 | 172 | 350 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003728 | 0.0 | AP003728.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0710B08. | |||
GenBank | AP004989 | 0.0 | AP004989.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1153E06. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644405.1 | 0.0 | zinc finger CCCH domain-containing protein 45 | ||||
Swissprot | Q0DA50 | 0.0 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | A0A0E0LEN8 | 0.0 | A0A0E0LEN8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G22420.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5989 | 24 | 28 |