PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G06310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 292aa MW: 31692.3 Da PI: 8.3851 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.6e-24 | 86 | 129 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e OPUNC06G06310.1 86 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129 79***************************************997 PP | |||||||
2 | QLQ | 62.7 | 9.7e-22 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++ OPUNC06G06310.1 12 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 46 5******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-10 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.039 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.6E-16 | 13 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.714 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-19 | 87 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MMMAGGGSGR CLFTATQWQE LEHQALIYKY MAAGAPVPPD LLLHLRHRAA AAGDVDTVPS 60 LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG 120 KNRSRKPVEM APSAAAAGGG VYRPSALSIS PPAHDAPLQL HLDSFHASTS PPPSYHRYAH 180 TSAPLFPTSG GYGGWSSSKE HCLSLGGATD LSMDKPADHH HDATSATTTT TTEKPLRRFF 240 DEWPRSDDRR TPWDGTQLSI SIPTAASSPD LAIAGAAASR YHNNGDHLRM SE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836198 | 0.0 | CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641768.1 | 1e-168 | growth-regulating factor 2 | ||||
Swissprot | Q6AWY7 | 1e-169 | GRF2_ORYSJ; Growth-regulating factor 2 | ||||
TrEMBL | A0A0E0L935 | 0.0 | A0A0E0L935_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G06310.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13992 | 25 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-43 | growth-regulating factor 5 |