PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G05210.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 344aa MW: 35008.1 Da PI: 10.5431

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G05210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.3e-07	144	180	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OPUNC06G05210.1 144 RRIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 180 58999*********8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.5	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-11	132	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.10E-9	132	184	No hit	No description
SMART	SM00353	5.7E-9	140	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-4	144	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-11	145	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MQPSSRDTVA GGGGDGPQDD FFDQMLSTLP SAWADLGGWW RRRRRRGRQA ASCTGRPASA 60 ARRTGAQKGA FSPLPLFTDR TNVPPREEME GGFKSPNAAA GGEHALFNGF GVHGSGGAGT 120 APPRQQRVRA RRGQATDPHS IAERRIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ 180 LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGGGGK ASKGGTGGES GGGGGGGGGG 240 GGMRVTEQQV AKMMEEDMGT AMQYLQGKGL CLMPISLASA ISSATSSASL ISRPSIRHAG 300 VPPQTMLDAA GPTSPAAMSN GATTGAVGDD PRHAKADGGA GGTQ

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MQPSSRDTVA GGGGDGPQDD FFDQMLSTLP SAWADLGGWW RRRRRRGRQA ASCTGRPASA  60
ARRTGAQKGA FSPLPLFTDR TNVPPREEME GGFKSPNAAA GGEHALFNGF GVHGSGGAGT  120
APPRQQRVRA RRGQATDPHS IAERRIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ  180
LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGGGGK ASKGGTGGES GGGGGGGGGG  240
GGMRVTEQQV AKMMEEDMGT AMQYLQGKGL CLMPISLASA ISSATSSASL ISRPSIRHAG  300
VPPQTMLDAA GPTSPAAMSN GATTGAVGDD PRHAKADGGA GGTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	47	RRRRRRGR

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005919	1e-141	AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBank	AP014962	1e-141	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-141	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	1e-141	transcription factor bHLH66
Swissprot	Q9LSQ3	1e-66	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A0E0L8N7	0.0	A0A0E0L8N7_ORYPU; Uncharacterized protein
STRING	OPUNC06G05210.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-45	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]