PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G23490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 29247.6 Da PI: 8.4915 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 113 | 164 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + r +r++lg+f ta+eAa a++ a+++++g+ OPUNC05G23490.1 113 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDVAALRMRGH 164 69*******.**********433...24**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.13E-27 | 112 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 113 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-14 | 113 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 113 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 113 | 172 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-34 | 113 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAIGAAPASN QPHDTSNILE NVWASIMTSS SPAMSSPVVA GQEENSAILQ RLPSLGRWIS 60 MGAEEWDELL LSGAALASDS SGELQLVAAS PGDNQVVVVG ANRTTATAAA RKSYRGVRRR 120 PWGKFAAEIR DTRRRGARVW LGTFATADEA ALAYDVAALR MRGHRAHLNF PLATVQKHLE 180 RDLAGAGGRS SSDQTSTRAR RRRRRSNTTA DAARSVVFSG VQTATNRDHM VSFASEKDQI 240 SMQECSASDA GVIDFEEIGG EYWDYLFPPL V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-26 | 112 | 172 | 4 | 64 | ATERF1 |
3gcc_A | 4e-26 | 112 | 172 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 204 | RRRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 0.0 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655590.1 | 1e-122 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A0E0L5S4 | 0.0 | A0A0E0L5S4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G23490.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 5e-19 | ERF family protein |