PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G26680.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 712aa    MW: 80411.3 Da    PI: 5.2377
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G26680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06114136427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f + G C  GdrC F Hgp
  OPUNC04G26680.1 114 VPCYYFKK-GNCLKGDRCAFYHGP 136
                      689*9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9532958IPR000571Zinc finger, CCCH-type
SMARTSM003560.00643057IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-113186No hitNo description
PROSITE profilePS5010310.9916086IPR000571Zinc finger, CCCH-type
SMARTSM003560.456285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502110137IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-5111135IPR000571Zinc finger, CCCH-type
PfamPF146081.5115135No hitNo description
Gene3DG3DSA:4.10.1000.107.3E-5115137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MEADGAAAAA AEASTEAGAR PLAPEEEALR RNTDCVYFLA SPLTCKKGNE CDFRHSDNAR  60
MNPRDCWYWL NSNCLNPKCP FRHPPIDGMF GAPTTGMPAV SSHYAPYNSG KQLVPCYYFK  120
KGNCLKGDRC AFYHGPQSVG NNPPEQVAKV SSLPLEQLQT QKNDLLGIKD SVQPNNSIQH  180
GAPITNERGK TAVDRSTVNS ARTATVAIPV ASNAMSCPKS EKVKNGTPAA LKESFTTSSG  240
EDHPECYQNH FPMDSDPVQD WNQSYEMPPA DDLPQNSREA DELLGESSPG FDVLVDNDAD  300
GAAYLHNEDF GGDMYPVEDY EYAPADFDVH AHHERERFNG MDEQDQMGHM YDGYERKRRR  360
SSSERSMERP FHSERRFLQR DRERVEMDGS DLRHRLRRRR INGSSLAISP ERNGEQRRRD  420
ERYRERAHGH RTHRDHHQSS RGSTLSSRLQ GRIKLPGRSP DRVDTRSEKE RDRRRLRDRL  480
SPVRRTEFQG ARHREAGQHE EQTQRRSSEL ALGPRNADGQ HSTRNVPDSH NFPHRKNLRD  540
SSKANGSVEP EASLDFEGPK PLSVILQRKR EAAWANGSSA CSPKQDKSAE VSRRQPISLA  600
EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGEKLEAEDI IEVDPVENQD  660
ADNYDQREGE SYYEPIEGQD YKSDEENAYE DDDEEYDDDD DDFARKVGVV FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355359RKRRR
2355360RKRRRS
3472479RRRLRDRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8278340.0HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLG9C2Z40.0G9C2Z4_ORYPU; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGOPUNC04G26680.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]