PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G00270.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 900aa    MW: 97597.9 Da    PI: 5.4171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G00270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-095485127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r G      C++Gd+C++aH++
  OPUNC04G00270.1 54 WKTSLCSFFRRRGasstdGCSHGDSCRYAHSE 85
                     8*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.2E-134991IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.94E-65190IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-45385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385386IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-75485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.3E-6132151IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.3E-6189245IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168741.26289894IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.81E-47291317IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.81E-47349452IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.81E-47511638IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.5E-60534638IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.8E-9583640IPR025714Methyltransferase domain
CDDcd024403.84E-7584638No hitNo description
Gene3DG3DSA:3.40.50.1507.5E-60776833IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.81E-47781833IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.1E-6786829IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300789821IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1507.5E-60868888IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MEMEMEDKKA PSPPPMESDV AGEKRKREDD ASSSAALVGE DAAANNSGAQ HPMWKTSLCS  60
FFRRRGASST DGCSHGDSCR YAHSEEELRP RPDGTWDPTS DRAKKLRKVA AEEVDEEVVT  120
VDDKALDKCL IGLPRGWAND RLKTFLQDKA TTTSSFIILS SFTTVYSNHL QLQIMLVYAN  180
LNAVTSLMVM QGISYATAKK KKGMTVGFVT FENIEQLKNA IEVLTENQSG GKEIKIADAN  240
RRSHQKLHTE KPVSDNGVAT ENGTSVDIPP GKTSAPEAAI SSKKSVRDAV TPLAHMSYND  300
QLEHKKNSVA QILKRLTRNA RKACPTGIPL PDWVFKSKEI GGLPCKLEGI LESPVINGYR  360
NKCEFSVGFS LEGKKTVGFM LGNFREGVTA VEEPVDCPNV SEISCKYALM FQDYLQSSSL  420
PVWNRIDNCG FWRQFTVREG RCSAQAVAQN AETEISEVML IVQVCSTGVD DALTKDEFDK  480
LTVALQQGAA TCSPPLPLTT IVVQDHKGIS NAAPADCPLI PLLVPKVDQS EGTVDKTRIH  540
DHIGNLRFSI SPTAFFQVNT LAAERLYTLA GDWANLNLGT LLFDVCCGTG TIGLTLAHRV  600
GMVVGIEMNE SAVSDAQRNA LINGVTNCRF VCGKAEDVMG SLLTEYLGSP QHDIPVSEGA  660
VSGTVKDEEV IDGSKNSGEN LDSSMQKNDN GESQQLGGAS ADSSSTIDEI KGNSNDRLGN  720
GLEGSHDEYN EVAGEDIHGE ASLINESVDL KVSDCLEDSK TSHDGSSISN NDVTAATACQ  780
FEDIVAIVDP PRVGLHPTVI KALRTHPRIR RLVYISCNPD SLVANAIELC TPSSEKQEKN  840
KGNRGWRTMS SAGLARQRTK SMPNSEPFVP KRAMAVDLFP HTSHCEMVNP KRGQGVPIFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A1e-16548645274371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
TrEMBLA0A0E0KM170.0A0A0E0KM17_ORYPU; Uncharacterized protein
STRINGOPUNC04G00270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein