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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC03G37480.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 333aa MW: 38034.9 Da PI: 8.776 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 11.8 | 0.00077 | 190 | 204 | 6 | 20 |
TTEEESSHHHHHHHH CS
zf-C2H2 6 CgksFsrksnLkrHi 20
Cg+sFsrk+ L H
OPUNC03G37480.1 190 CGTSFSRKDKLFAHV 204
**************7 PP
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| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 333 aa Download sequence Send to blast |
MKHLMSRNVS QGRNSICHHR SKKPDRSKMK TYSYAQSPNL IAGNGWIEVQ EAIELRKEIR 60 RGDKPQNQWE QLAWQGIRKR SWQTEQTSSS GGTGDADEEV EELIPFPFSS PPLPNSLPLA 120 DAHGRYLPRN REHKNFQPLK TPICVKNHYR RSHCDKSFTC RRCNVKKFSV LADLRTHEKH 180 CGRDRWVCSC GTSFSRKDKL FAHVAIFDGH SPALPPEDYD DDATTPAGSG HLPHAGGEVL 240 SRMVDTNHFF SDELMIKGSM DDERGNLSPM GLDYYTMEKF HLAVKITSKY FWEFLQQFAK 300 IIIGEPKSPK NSKCRNTGLW SMHEEATTTI AAD |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012611 | 1e-158 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0E0KLB6 | 0.0 | A0A0E0KLB6_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC03G37480.1 | 0.0 | (Oryza punctata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1512 | 38 | 111 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G34370.3 | 3e-50 | C2H2 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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