PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G26580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 338aa    MW: 35376.8 Da    PI: 5.8729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G26580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-15183228555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  OPUNC03G26580.1 183 HVVAERKRREKINQRFIELSAVIPKL-----KKMDKATILSDAASYIRELQ 228
                      8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.24178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17182246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-19182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-15183232No hitNo description
PfamPF000101.7E-12183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-16184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDESSLFLQW AVSTLQHQHP AAVGVVADDD ERRRSEASAA FFSLQALCDA AEVVVTVHEV  60
ITEAHGGGGG ASSCRSTGNV GGGGGIGLAV AVEEEHGGCR STSPNSWGRP PSGGSSSSGS  120
NNLPLMSWDF SAASVAVQVQ PNGGGAPEMA YGSPPSTGGS TRKAAASSSS APTAGAAYAQ  180
LEHVVAERKR REKINQRFIE LSAVIPKLKK MDKATILSDA ASYIRELQEK LKAVEEQAAA  240
GTARVTETVA AMVAPPSPAR NLPLPPEIEV RCSQNNDVIV RIHCENGEGV IVRILAEVED  300
IHLRIINANV MPFMEGTTMI ITIAAKASSS LRAIYYYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-14181237763Transcription factor MYC2
5gnj_B8e-14181237763Transcription factor MYC2
5gnj_E8e-14181237763Transcription factor MYC2
5gnj_F8e-14181237763Transcription factor MYC2
5gnj_G8e-14181237763Transcription factor MYC2
5gnj_I8e-14181237763Transcription factor MYC2
5gnj_M8e-14181237763Transcription factor MYC2
5gnj_N8e-14181237763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRE
2187192RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163691e-94AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467181e-94AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149591e-94AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-94CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-104LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0E0KHB10.0A0A0E0KHB1_ORYPU; Uncharacterized protein
STRINGOPUNC03G26580.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-29bHLH family protein