PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G18280.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 302aa MW: 33615.7 Da PI: 6.5349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G18280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.5e-05	60	119	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + a+ + + Ka iL+ +++ +++L OPUNC03G18280.1 60 RKAHKSEREKLKRGHLNDLFGELGNMLASEQlqqpsaEADRQSNGKACILTDTTRILRDL 119 678899***********************6669998666666699999999999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.6E-8	57	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.845	59	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.41E-9	60	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MADGFLVDWF SAANGRRRFL EEAMVPSERG DVATAVRPAA ADKLVHGPIS DKKCRKKVPR 60 KAHKSEREKL KRGHLNDLFG ELGNMLASEQ LQQPSAEADR QSNGKACILT DTTRILRDLL 120 SQVKSLRQEN STLQNESNYV TMERNELQDE NGVLRNEISD LQNELRIRAT GSPGWGHGAT 180 GPPLPIPPSP NTVFQSQQPM QPSPMTTSTV FPLQQPLPQP TVIEPSYARQ PLELKLFLEA 240 PPTEDPEPSE NQEALNNVAR PQPRYPTEAS SWPISLGFPR MENEQCSSRT AYNSKIDSTG 300 RV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT830139	0.0	CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633301.1	1e-169	transcription factor BHLH062-like
Refseq	XP_015633302.1	1e-169	transcription factor BHLH062-like
Swissprot	Q69V10	7e-79	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0KEC3	0.0	A0A0E0KEC3_ORYPU; Uncharacterized protein
STRING	OPUNC03G18280.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-26	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]