PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06340.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 975aa    MW: 108909 Da    PI: 5.2109
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06340.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1119.61.5e-37201223118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk              k+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OPUNC03G06340.3  20 KEaQRRWLRPTEICKILKNYRSFRIAPEPPNRPPSGSLFLFDRK--------------KRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 99 
                      55599*************************************85..............689********************************* PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Lee++ +ivlvhylevk
  OPUNC03G06340.3 100 RRSYWMLEEDYMHIVLVHYLEVK 122
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143752.39115127IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-5418122IPR005559CG-1 DNA-binding domain
PfamPF038599.0E-3221121IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-7387473IPR013783Immunoglobulin-like fold
CDDcd001026.04E-5388475No hitNo description
SuperFamilySSF812963.5E-17389474IPR014756Immunoglobulin E-set
PfamPF018331.9E-8389466IPR002909IPT domain
SuperFamilySSF484038.39E-17577681IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.0E-18579685IPR020683Ankyrin repeat-containing domain
CDDcd002044.50E-13580678No hitNo description
PROSITE profilePS5029718.086586690IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.79586618IPR002110Ankyrin repeat
PROSITE profilePS500888.843619651IPR002110Ankyrin repeat
SMARTSM002480.013619648IPR002110Ankyrin repeat
SMARTSM002482000658687IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-8789843IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075792814IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407793822IPR000048IQ motif, EF-hand binding site
PfamPF006120.0031794813IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578816840IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4818837IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICKILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKKRDGKTV KEAHERLKSG SIDVLHCYYA HGEENINFQR RSYWMLEEDY MHIVLVHYLE  120
VKAGKLSSRS TGHDDILQAS RVDSPLSQLP SQTTEGESSV SGQASEYDET ESGSYQGLQA  180
TAPNTGFYSH GQDNLPVVLN ESDLGTAFNG PNSQCDLSLW IEAMKPDKGT HQIPLYQAPV  240
PSDQTPFIGG PGIESFTFDE VYNNGLSIKD VDGDDTDGET PWQIPNASDT FATVDSFQQN  300
DKTLEEAINY PPLKTQSSSL SDIIKDSFKK NDSFTRWMSK ELAEVDDSQI TSSSGVYWNS  360
EEADNIIEAS SSDQYTLGPV LAQDQLFSIV DFSPTWTYAG SKTRVFIKGN FLNSDEVKRL  420
KWSCMFGEDE VPAEIIADDT LVCYSPSHKP GRVPFYVTCS NRLACSEVRE FEFRPQYMDA  480
PSPHGSTNKT YLQKRLDKLL SLEQDEIQAT LSNPTKEIID LSKKISSLMM NNDDWSELLK  540
LADDNDPATD DKQDQFLQNC IKEKLLIWLL HKVGDGGKGP SVLDEEGQGV LHLAAALGYD  600
WAIRPTITAG VNINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGAVT DPTPSFPSGS  660
TPADLASTNG HKGISGFLAE SSLTSHLQTL NLKEAMRSSA GEISGLPGIV NVADRSTLPL  720
AVEGRQTGSM GDSLGAVRNA AQAAARIYEV FRMQSFQRKQ AVQYEDDNGV ISDERAMSLL  780
SAKPSKPAQL DPLHAAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKII  840
WSVGIVEKVI LRWRRRGAGL RGFRPTENAV SESTSSSSGN VTQNMPAEND YDFLQEGRKQ  900
TEERLQKALA RVKSMVQYPD ARDQYQRILT VVTKMQESQA MQEKMLEEST DMDEGLLMSE  960
FKELWDDDVP TPGYF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0E0K9W70.0A0A0E0K9W7_ORYPU; Uncharacterized protein
STRINGOPUNC03G06340.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]