PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G33030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 371aa    MW: 36779.5 Da    PI: 4.6811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G33030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-071912281355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OPUNC02G33030.1 191 RERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 228
                      89***************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.062178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-6189233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-5191228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-11191237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12191237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-8191232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQPNGRQMHG GGGGGGGGGQ DDFFDQMLST LPAVWSELGS GKPTWELTAG VGGGGGGASD  60
DHSAAAFDDS ALLASRLRQH QIDGGGDKPI MLQLSDLHRH HGLAAAGDDG GGAAGFLPLS  120
LFADRSQDDM DAAFKSPNDA GGDQALYNGF GAAGMHGAAA MQPPPFGQGG SMPAQSFGGG  180
AAASGGGGGG RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG  240
GASAVAPLVA NMSSESNGNG NGTSISGNGE AANGRSNSDN GGGTLRVTEQ QVAKLMEEDM  300
GSAMQYLQGK GLCLMPISLA TAISSATSSS LLPRPAGGAG GSLHEGGNGT SPPLVNGAPT  360
SGDDAGAGGK Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039751e-178AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040941e-178AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149581e-178AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0transcription factor bHLH66
TrEMBLA0A0E0K6A20.0A0A0E0K6A2_ORYPU; Uncharacterized protein
STRINGOPUNC02G33030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-47LJRHL1-like 2