PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G31900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 303aa    MW: 32781.5 Da    PI: 8.3357
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G31900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.6e-2591134144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  OPUNC02G31900.1  91 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 134
                      79***************************************998 PP
2QLQ60.16.3e-211954237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++
  OPUNC02G31900.1 19 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 54
                     9********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-111854IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8011954IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-151952IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57391135IPR014977WRC domain
PfamPF088791.5E-2092134IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMMMSGRPSG GAGAGGRYPF TASQWQELEH QALIYKYMAS GTPIPSDLIL PLRRSFLLDS  60
ALATSPSLAF PPQPSLGWGC FGMGFGRKAE DPEPGRCRRT DGKKWRCSKE AYPDSKYCEK  120
HMHRGKNRSR KPVEMSLATP PPPSSSATSA ASNTSAGAAA TTTSSSPVPS YNRPITHDAA  180
PYQALYGGPY AAATARTPAA ATAYHAQVSP FHLHLDTTHP HPPPSYYSMD HKEYAYGHAT  240
KEVHGEHAFF SDGTEREHHH AAAGHGHKGS WMGLEGETQL SMSIPMAAND LPITTTSRYH  300
NDD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2018950.0AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647996.11e-147PREDICTED: growth-regulating factor 1
SwissprotQ6AWY81e-141GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLA0A0E0K5W00.0A0A0E0K5W0_ORYPU; Uncharacterized protein
STRINGOPUNC02G31900.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-52growth-regulating factor 5