PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G13890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 29675.2 Da PI: 8.8324 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.4e-16 | 29 | 129 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k l+psd ++ +l +p +++ + g ++led++g + W +++ +k+ g + ltkGW Fv+++gLk+gD+v OPUNC02G13890.1 29 FEKFLMPSDLCRNtEWLGIPEEHVWKLG--------MMLEDRDGysviffedgvvpgKLWCFRY--WKSNGVHSLTKGWGCFVREKGLKAGDTV 112 899******9998899********9996........788888888888888888899*******..**************************** PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 F + g+s+++l++ ++ OPUNC02G13890.1 113 SFFR-GSSCGRLFICCRS 129 **95.4499988887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 19 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-17 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.95E-17 | 28 | 129 | No hit | No description |
SMART | SM01019 | 1.3E-6 | 29 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 29 | 129 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.151 | 30 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAASLPLSAA VVRAEESVDM EVQEMEYLFE KFLMPSDLCR NTEWLGIPEE HVWKLGMMLE 60 DRDGYSVIFF EDGVVPGKLW CFRYWKSNGV HSLTKGWGCF VREKGLKAGD TVSFFRGSSC 120 GRLFICCRSG THATFKSSST LHHGFSMSPL PVRQLVGLES GMLARDVTSL GQARLHVGNQ 180 VGGSAPARHV PSSRRRVEAQ PSRAPLHRRR TTTEHSVPDP MIEMPPILES MFLTAAPPAV 240 KRLRLFGVNI YVLPLSSSGQ PKQESNP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005608 | 0.0 | AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07. | |||
GenBank | AP005696 | 0.0 | AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625111.1 | 1e-160 | B3 domain-containing protein Os02g0455800 | ||||
Swissprot | Q6K3B2 | 1e-161 | Y2558_ORYSJ; B3 domain-containing protein Os02g0455800 | ||||
TrEMBL | A0A0E0JZH1 | 0.0 | A0A0E0JZH1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G13890.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 6e-18 | B3 family protein |