PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G11300.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 579aa    MW: 61404.2 Da    PI: 8.9935
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G11300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573446.2e-14190280698
           DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                       w+ +Dei +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  OPUNC02G11300.1 190 RWTTDDEIKILEVLVAHFKSNGTQ--LNVEGIIAAVGDSLDRKSIKySDMYEKVRRLKQRYEATAKKIEQGGDLP-AKEDDLRMYQLSSGIWGK 280
                      5***************99999954..699***********98765538***********************9965.567889**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.7E-19190279IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPPL PEAESSADSS GEEEERESPA APPPQKPSGR GAASEEEEDS  60
DTDTYAQGFQ LRKVGGDEEG EEGGSSESES EPEPVKKESA KTTKADAKKK RAAPEPAPSG  120
KAKKAKPEKS VPAPAPEPAP SSGKSKKAAK AEAAKAAAAA EPDPSSSKAK KSKVAPEPSP  180
SSKSGKAPSR WTTDDEIKIL EVLVAHFKSN GTQLNVEGII AAVGDSLDRK SIKYSDMYEK  240
VRRLKQRYEA TAKKIEQGGD LPAKEDDLRM YQLSSGIWGK NAKDAVSAPA SQNNGNSSKN  300
KKGQAKKDKV DGDSKEAARE DKVDEATTAV NEKSGTLTEN KKGKATKQKT GAETKVGSSK  360
EAALAASPTK GKKKGSHKDK LDEEAKSGTA KETSTIAADD DDDDDDGTLG GSKREKAGKE  420
KLDGDTQIVM PKEATTTATR DDGTLVGSKK GKADKGKLDG DTHSVMPKEA TAGTQNGGIL  480
TGVENHKEKV DKDANVPSIR REYVELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD  540
KACTLESKIK KQKIAEVRMQ LRLADTKKEV TNALLGLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731470.0AK073147.1 Oryza sativa Japonica Group cDNA clone:J033022M16, full insert sequence.
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLA0A0E0JYL10.0A0A0E0JYL1_ORYPU; Uncharacterized protein
STRINGOPUNC02G11300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.13e-06DNA-binding storekeeper protein-related transcriptional regulator