PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G08070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 587aa    MW: 61182.8 Da    PI: 7.9695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G08070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11410453553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  OPUNC02G08070.1 410 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 453
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16404475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212405454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15409474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9410453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-5420454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDTIFLLGQE SRQRILHRAA ASLPGCAYLS VWARVADAAG LQHNPPPSGG AAAARLLYCL  60
DAWLSGGDDD SGGGGGVVRG LFDAYRGSVC AAVTGCVPGW AHVDGGGAYM ELSELDLAAS  120
ASLPVQHSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGSSLQASV EQVFSEDFFQ  180
QSLLEELLQL PPTRPSSSSS SLVGSPADGA STSLLRTMTP VMASSSATPS PRDLAVQVAT  240
TTTTPSSSRL HPRPPPHHVS PFSRHGGGGG GVLHFPSAEA DDAAMAQAML DVISSPSTSS  300
SAAALHAPWS SSVKHRAQIR SPRRGTTTAF LAYNAALAPR AAALRRTPGA PGQRMIKMGF  360
SILRRMHMVR CSQERAAAAA ASAAAAQRGG DDEEDATAAP PPPTSSQLHH MISERRRRER  420
LNESFEHLRG LLPPGSKKDK ATVLAKTLEY MNLLIAQISE LEAKNRTLQT QIHQRANGSS  480
SSSMIRTVNE VHHQWLTAAA AGGGGSPERV QVHVIRGGDG TSTSPEVTVR VEVRASEGGA  540
DVSELVLRVL ALLKGMGGFT VVAIDARQPS GGGNGVAQAS LTLRATR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413418ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057970.0AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLA0A0E0JXF60.0A0A0E0JXF6_ORYPU; Uncharacterized protein
STRINGOPUNC02G08070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-15bHLH family protein