PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G04080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 298aa MW: 32210.3 Da PI: 5.5847 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.5 | 3e-22 | 34 | 78 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ienk rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+ OPUNC02G04080.1 34 KLIENKDARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 78 569***************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.006 | 26 | 86 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-28 | 26 | 85 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-26 | 27 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 28 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.59E-31 | 29 | 95 | No hit | No description |
Pfam | PF00319 | 2.8E-24 | 36 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 48 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 63 | 84 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTTTAKAAAE MDVVGGGEGR RRKRTRGRQK IEMKLIENKD ARQVCFSKRR EGVFKKASEL 60 SVLCGARVAV VFFSPAGRPH CFGHPSVHAV ADRFLLGRST AVAAVAATAE EEEEAVVREF 120 NRMEERLTDA LEAEARRRDA LDEAARAAGV WDDADVRRAG LADLLSMLAA LERVQAEVSE 180 RVHEIIVEET MTHYTAAAAA NIIDYLDAGP FVSHSPGSHD AVVMEDTTVK LVGGDVVHAP 240 PPPPFAPMIM PPPLPAQFSH GFGYSDLAAG YGYNNLDYGH GAACETEGFH NATACDFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878655.1 | 1e-147 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A0E0JVX2 | 0.0 | A0A0E0JVX2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G04080.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-22 | AGAMOUS-like 29 |