PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G28880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 312aa MW: 35008 Da PI: 7.3531 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.4 | 1.2e-10 | 64 | 160 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 +W+++ + aL++a ++ r +r++l++ W evs+ ++ + s qC+++++ l+k+y+k+ke+ + + +s s++ yfd OPUNC01G28880.1 64 EWSEDSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSESQCRNRIDTLRKKYRKEKERLRLAArrlsrpdRPSPSKWIYFD 157 5**********************************99977764444456999******************988653111111234567888888 PP trihelix 84 qle 86 +++ OPUNC01G28880.1 158 KMQ 160 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-17 | 63 | 162 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDDGAAPAAA EFPSPSPSSS GASPSPRSKR RRTERYAQGF EFAPRPAPAT ATAPAPTPSR 60 GSPEWSEDST FALLDAWGDR FVRAGRRSLR ADEWLEVSRL AAAAASRPPG YYSESQCRNR 120 IDTLRKKYRK EKERLRLAAR RLSRPDRPSP SKWIYFDKMQ SLMCPPPLPL QPPVVTRRRD 180 TQPVPRQSWG LDAAEYVLGG CDNAGTRDSG FDAELGDEEQ PNEAGAGKGK DFDLLVESIR 240 KLGDVYERVE SSKRQHMAEV ERMRRDLQRD LEVRRREILV KAQAEIVRLT EEDGEEGDLK 300 EGEGDDNKSL HD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 264 | RQHMAEVERMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623327.1 | 1e-155 | uncharacterized protein LOC4324693 | ||||
TrEMBL | A0A0E0JNB5 | 0.0 | A0A0E0JNB5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G28880.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8090 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-26 | Trihelix family protein |