PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G22960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 461aa    MW: 50207.1 Da    PI: 7.4076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G22960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-11107132227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ t tCk+G++CkF H++
  OPUNC01G22960.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                      7889********************97 PP
2zf-CCCH40.74e-13157182227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tG Ck+G++CkF+H++
  OPUNC01G22960.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182
                      6899********************96 PP
3zf-CCCH31.14e-10211235327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++lC+f+a+tG Ck+ + CkF+H++
  OPUNC01G22960.1 211 EPLCSFYAKTGKCKFRAMCKFNHPK 235
                      79*********************96 PP
4zf-CCCH39.78.1e-13288313126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+f++++G Ck+G+ C+F+H+
  OPUNC01G22960.1 288 PGEVDCPFYMKMGSCKFGSACRFNHP 313
                      57899********************9 PP
5zf-CCCH36.11.1e-11371392526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG+Ck+ drCkF+H+
  OPUNC01G22960.1 371 VCDFYMKTGFCKFADRCKFHHP 392
                      7********************8 PP
6zf-CCCH33.85.6e-11426448527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  OPUNC01G22960.1 426 VCAFYMKTGVCKFGMQCKFDHPP 448
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8107132IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23155183IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5161182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267208236IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5208235IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6211235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4213234IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657287315IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5291314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7365394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859366394IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7366393IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8370392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6371392IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5421448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408421449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5424449IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8425448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4426446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSDPFYPYGH GGAGEGAAAA GYSSYEVDLI AARYGGRPLA NPSSAAGDLD ARLAVAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMA KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQEGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKVNALAS GKANDKHLIA DSSILPVRPS EPLCSFYAKT GKCKFRAMCK FNHPKDIEIP  240
SSQNEPESAV TVEGETDIGS AADSVSAKML TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG  300
SCKFGSACRF NHPDRLVLNF PLPLGQTILP TPESMLLNPA TNFMQGYDFH SAHTPVGPGA  360
VTYPQRPGAT VCDFYMKTGF CKFADRCKFH HPIDRSAPDP SANWEPAEES LQLTLAGLPR  420
REDAVVCAFY MKTGVCKFGM QCKFDHPPPQ EAIAKVSNSG S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0E0JL710.0A0A0E0JL71_ORYPU; Uncharacterized protein
STRINGOPUNC01G22960.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-143floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]