PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G11770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 582aa    MW: 60730.3 Da    PI: 7.3446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G11770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.7e-30299357259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  OPUNC01G11770.1 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 357
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-33283359IPR003657WRKY domain
SuperFamilySSF1182901.96E-27291359IPR003657WRKY domain
PROSITE profilePS5081129.31293359IPR003657WRKY domain
SMARTSM007746.8E-36298358IPR003657WRKY domain
PfamPF031065.1E-26300357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MELRPPPKQQ HHHHHRRRRG GDEEEEQEAA AMEHGHLSLH GGSGGAFWRP RDEEEKGGGR  60
RGEIKEVDFF LGSSRDVAAS RRHDDAFRGT HGGSGDVNIG LDLLTTTTTT TGAAAGDAAA  120
GAGEEDTTKN HRMEATTAVD AELRRVVEEN RRLRGMLDEL TRSYSALYHQ YLQVTQQQNH  180
RHPDHLIMNS NRSSLTQTHR TAATTQQFLE PRPSSTAQAA AAAADVDMAA SDDDEAGGSD  240
ASPSLTSNTG GGNKIRRVGG QDETAAPARE NGEQQTAAEL PCRKPRVSVR ARSEAPMISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMAIGC PVRKQVQRCA EDKTVLITTY EGNHNHQLPP  360
AATTMANTTS AAAAMLLSGP AASRDGAAAL LGHHHHPAAM FHHSFPYAST MATLSASAPF  420
PTITLDLTQT PAGGAGAAGL LHALHRPPAI HPGAAQAMPF AVPPQLAMYL PQQRAAPGML  480
PAASAGLGGA RQPSVMETVT AALADPNFTT ALAAAISSVV AGGAHQSLST TPRSASGVAV  540
AGDGNGNGSS AAAASPALTA AEAPAASGSP PRLATQSCTT ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22289359877Probable WRKY transcription factor 4
2lex_A1e-22289359877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0E0JHB20.0A0A0E0JHB2_ORYPU; Uncharacterized protein
STRINGOPUNC01G11770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-55WRKY family protein