PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G01900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 82aa MW: 8871.05 Da PI: 8.2081 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 41.5 | 2.1e-13 | 1 | 56 | 319 | 374 |
GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e+aGF+ vpls+ a + + ++r+++ + + e g+l+l+W++rpL+s+SaWr ONIVA12G01900.1 1 MEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENRECGGCLLLCWSSRPLYSISAWR 56 89*************************887888899*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.2E-11 | 1 | 56 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MEMAGFTGVP LSYAAIRKGN DMVRRCGLRR CENRECGGCL LLCWSSRPLY SISAWRPAAS 60 GGAGSGSERS EYIHVGAEAD DR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL935154 | 1e-137 | AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-137 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-137 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | FQ377947 | 1e-137 | FQ377947.1 Oryza glaberrima chromosome 12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619131.1 | 2e-51 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0J6F7 | 3e-52 | A0A0E0J6F7_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1R3W0 | 9e-51 | I1R3W0_ORYGL; Uncharacterized protein | ||||
STRING | ONIVA12G01900.1 | 4e-53 | (Oryza nivara) | ||||
STRING | ORGLA12G0021600.1 | 1e-51 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-13 | scarecrow-like 3 |