PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G13830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 182aa MW: 20782.7 Da PI: 9.0779 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 23.7 | 5.4e-08 | 3 | 37 | 165 | 200 |
GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 L k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gE ONIVA11G13830.1 3 LMKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGE 37 7899************.7****************99 PP | |||||||
2 | GRAS | 96.5 | 3.9e-30 | 55 | 171 | 235 | 361 |
GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 sPkv+vv+ qea+hn++ + erf+eal+yy+alfd le++++r s e + vEr llg+ei+n+ + he+le+W +rle aGF+ vp ONIVA11G13830.1 55 SPKVMVVTKQEASHNAALLTERFVEALNYYAALFDGLEVGAARGSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRVP 138 8*************************************************************8......4....89999*************** PP GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlg 361 ls++a qa+++ + + dg++v ee+g ++l ONIVA11G13830.1 139 LSYYALLQARRVAQGLGCDGFKVREEKGNFFLF 171 ****************************99873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.218 | 1 | 164 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-5 | 3 | 37 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-27 | 55 | 171 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MALMKEAERL DVPFQFNPVV SRLDALDVES LRVKTGERRS QESGLSPSTS RADASPKVMV 60 VTKQEASHNA ALLTERFVEA LNYYAALFDG LEVGAARGSV EHTRVERWLL GEEIMNIWHE 120 RLERWVRRLE GAGFGRVPLS YYALLQARRV AQGLGCDGFK VREEKGNFFL FFVSTWRGRR 180 FD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-16 | 7 | 179 | 183 | 381 | Protein SCARECROW |
5b3h_A | 2e-16 | 7 | 179 | 182 | 380 | Protein SCARECROW |
5b3h_D | 2e-16 | 7 | 179 | 182 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124151 | 1e-128 | AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence. | |||
GenBank | AP014967 | 1e-128 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819415.1 | 4e-94 | scarecrow-like protein 3 | ||||
Refseq | XP_025819416.1 | 4e-94 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 3e-38 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0J271 | 1e-129 | A0A0E0J271_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G13830.1 | 1e-130 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-40 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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