PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G02940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1235aa MW: 136113 Da PI: 7.7484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.4 | 8.7e-92 | 34 | 481 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 +LlecA +v++g +e+a+++Lar l a+ +g p +Rla ++ La+rl+r v+ + +al ps + ++ aa++ f+e+sP++k+ ONIVA11G02940.1 34 ALLECAAHVETGPMEKATRCLARATGLaaAAAAGdGPRKRLAVAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKV 125 69*********************99996555556479***********************99995444443..34555578899********** PP GRAS 94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++++ N+aI+eave+e+ vH++ ++ +q+ QW+ Ll++L Rpegpp +R+T+v++ + e l +++e ++ Aeelg++f+f+ v+ ONIVA11G02940.1 126 AFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMEELVSDEAEELGMEFQFHG-VVG 214 ************************86679****************9988789*******....***************************.799 PP GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll............................................................ 214 +ledl++++L ++k+gEal+V++ lqlhrll ONIVA11G02940.1 215 QLEDLDFSNLrnvlEIKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmavnscpsssgggsvqykdddpyrspatpltfvs 308 9****9999866667889**************************************************************************** PP GRAS 215 ........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres........eerikvErellg 291 + +++l ++L++v+ lsPk++vv+eq+adhn+ sF +rf+eal++y+a+fdsl +a ++++s +er+ vEr+++g ONIVA11G02940.1 309 ppvstphfQTPAAL----ASFLSAVRALSPKILVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLdDAAAATTSaashlwspDERAQVERVVVG 398 *9986555555555....55*********************************************766666666788899999*********** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ei+ v+ ga+rre h +l++W +r+e+aGF+ vpls+ a + + ++r+++ + + +e g+l+l+W++rpL+s+SaWr ONIVA11G02940.1 399 EEIKGVLLRDGAHRREWHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENKECGGCLLLCWSSRPLYSISAWR 481 ******************************************************887999999*******************8 PP | |||||||
2 | GRAS | 211.6 | 4.2e-65 | 584 | 892 | 111 | 374 |
GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198 vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l +++ L+k Ae+lgv+f+f v rle+l++++Lr ONIVA11G02940.1 584 VVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqikf 672 59*****8653389***************************....9**************************.799**********54444555 PP GRAS 199 gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251 g a+a++++lq+hrll s +++ ++L++++ l+P+++ ++eq+adhn+ ONIVA11G02940.1 673 GVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIQALKPNIMLIMEQDADHNTL 766 *******************************************************98666777778899************************* PP GRAS 252 sFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 F +rf e l+yy+alfd+++a ++++ +er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a + k l ONIVA11G02940.1 767 LFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREGKENLL 860 ********************77654444456*************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + +e++g+++l+W +L+s+SaWr ONIVA11G02940.1 861 SFGLKNCQNKEDRGCFLLCWGYTNLYSISAWR 892 ***888*************************8 PP | |||||||
3 | GRAS | 45.2 | 1.6e-14 | 982 | 1078 | 2 | 98 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + lL++cA vs+g++ +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ ++l++al +s++s + + a++ ++v P+lk ONIVA11G02940.1 982 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLK 1072 679*******************************9*****************************888887544.44446778899******* PP GRAS 93 fshlta 98 +++l a ONIVA11G02940.1 1073 LAFLSA 1078 **9987 PP | |||||||
4 | GRAS | 162.7 | 3.1e-50 | 1074 | 1224 | 226 | 374 |
GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+erhe++++W + ONIVA11G02940.1 1074 AFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERVERHERARQWAA 1164 59********************************************999.68889************************************* PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr ONIVA11G02940.1 1165 RMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 1224 ****************************8888****884345678**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.599 | 5 | 461 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-89 | 34 | 481 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-62 | 584 | 892 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 26.34 | 585 | 872 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-47 | 1074 | 1224 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 17.621 | 1076 | 1201 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1235 aa Download sequence Send to blast |
MFSGTDASSP ELSLCSPYGP WTQGRSPTEE LGLALLECAA HVETGPMEKA TRCLARATGL 60 AAAAAAGDGP RKRLAVAMVD CLARRLLRPV QAITDALIDP SVYLDRRSVR AARRGFFELS 120 PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT 180 VVHDDGELLA KMEELVSDEA EELGMEFQFH GVVGQLEDLD FSNLRNVLEI KSGEALVVSC 240 TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQHMAVNSC PSSSGGGSVQ YKDDDPYRSP 300 ATPLTFVSPP VSTPHFQTPA ALASFLSAVR ALSPKILVVA EQDADHNGVS FRKRFCEALH 360 HYAAVFDSLD DAAAATTSAA SHLWSPDERA QVERVVVGEE IKGVLLRDGA HRREWHDRLR 420 QWAARMEMAG FTGVPLSYAA IRKGNDMVRR CGLRRCENKE CGGCLLLCWS SRPLYSISAW 480 RPAASRGSGS GSERSDPHTD PPCRVGRSAA APAMSASLHR PALASLLQIG AGGCGVLGVF 540 APGPRFPCRG YHPCRSSSTL GSASLTPRRW HISPPGLRIR DVLVVHIVDL SCSAAHPWQW 600 LKLLDDFHGR PGGAPELYLT VLHDDNDFLA DMQSLLSKKA ESLGVSFHFI SVIGRLETLD 660 FSNLRSTFQI KFGVAVAISC ALQMHRLLLV DDNLSSTSIA QLQKMANFTQ PKQMASSVCS 720 PASTLNYLQT PSPRTPKLLA RLLSAIQALK PNIMLIMEQD ADHNTLLFRD RFNEVLNYYA 780 ALFDCFHAVA AANPGRTDER LRVERMILRE EIKNILVCEG VHRHERHERL DQWAMHMEES 840 GFHNVQLSFS AIREGKENLL SFGLKNCQNK EDRGCFLLCW GYTNLYSISA WRQNRGSSSG 900 SREHILHPNF PLWVLCSAYV WQLKVQADNL RLCCTDRGMF QDDMLSSATS SPASSVYSPS 960 PSPSNGSWVQ ELSHDQQSVR LIGLLYQCAA EVSAGSFDRA NLCLEHITQL ASLDAPHALQ 1020 RLAAVFADAL ARKLLNLIPG LSRALLSSAN SADAHLVPVA RRHMFDVLPF LKLAFLSAVR 1080 SLSPKIMVMT EQEANHNGGA FQERFDEALN YYASLFDCLQ RSAAAAAERA RVERVLLGEE 1140 IRGVVACEGA ERVERHERAR QWAARMEAAG MERVGLSYSG AMEARKLLQS CGWAGPYEVR 1200 HDAGGHGFFF CWHKRPLYAV TAWRPAASRR GYTRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-16 | 34 | 1224 | 7 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619131.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0IY62 | 0.0 | A0A0E0IY62_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G02940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 9e-67 | scarecrow-like 3 |