PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G13320.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 366aa    MW: 38224.4 Da    PI: 5.9477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G13320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-18179233256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ONIVA09G13320.1 179 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 233
                      788899***********************************************98 PP
2HD-ZIP_I/II127.17.7e-41179269192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  ONIVA09G13320.1 179 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 269
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-18164229IPR009057Homeodomain-like
SuperFamilySSF466892.05E-18167236IPR009057Homeodomain-like
PROSITE profilePS5007117.07175235IPR001356Homeobox domain
SMARTSM003891.1E-15177239IPR001356Homeobox domain
CDDcd000867.99E-17179236No hitNo description
PfamPF000462.5E-15179233IPR001356Homeobox domain
PROSITE patternPS000270210233IPR017970Homeobox, conserved site
PfamPF021831.4E-10235269IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24235278IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AEAGRRDHEV RRELEFGSMS SRCGGSSPEP  60
TVRLTLLPMV PGLGLPWPPP PPPPSSESSE CGDGHLEAST RGFDVNRPPS SGGGGGGEEE  120
QDDVAGAALS SSPNNSAGSF PMDDFSGHGL GGNDAAPGGG GGDRSCSRAS DEDDGGSARK  180
KLRLSKEQSA FLEESFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD  240
CEYLKRCCET LTEENRRLQK ELAELRALKT VHPFYMHLPA TTLSMCPSCE RVASNSAPAT  300
ASSAATSSTA APPAAPSSGG IAATSSSSAA AAAAPDHRPS SFAALFSSPR GFPLSVAPQA  360
QPPTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227235RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.10.0homeobox-leucine zipper protein HOX11
SwissprotA2Z1U10.0HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0E0IKT60.0A0A0E0IKT6_ORYNI; Uncharacterized protein
STRINGONIVA09G13320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-63homeobox from Arabidopsis thaliana