PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G20630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 1080aa MW: 115224 Da PI: 7.7942 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 562 | 584 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + H +H ONIVA08G20630.1 562 FECPVCNKTFEEQSRYFGHVGSH 584 89************999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 10.023 | 387 | 460 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 8.5E-7 | 391 | 442 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.890.10 | 5.9E-4 | 392 | 441 | IPR001739 | Methyl-CpG DNA binding |
Pfam | PF01429 | 2.6E-5 | 397 | 440 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF57667 | 9.34E-5 | 512 | 584 | No hit | No description |
SMART | SM00355 | 0.41 | 513 | 536 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 515 | 536 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 562 | 589 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 562 | 584 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 564 | 584 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1080 aa Download sequence Send to blast |
MPSSSPAGGA LALPLPSSVA EGALGLGRER GGGGSSCFVR ETRFVVPTAV VDEASMEPFV 60 CSGDAHMVLP APVVELTKYS QPNLIMNPRS SEPEASNKET TTIHKVCCRS PPPFILSPTP 120 MPLPPAIPSS PSLPAATMFQ NKELTPTQLR RRHLIPPASD TVASHRSSDR RSGGRLAGEE 180 AAWGGRRRRG GGGGAMETEV FPVVDLRVLS QSDLDALAAA SAHAVAPGGS CPDADQLPPL 240 KIDRAVFNES AGSRKQTFSR VRFGAAAAVA ASPSSPSPSA AAKLPRGNDK EDSFIAYHLR 300 RLFAPDDPSS PQTQTLALPA PPSPDPDQLT TNSKGVSVDL VSLSRLADPY DAELGKRTAG 360 MTTEEELMGF ISSLAGQWVS QRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS 420 YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT 480 GMDSQSILPV ASITFSSHSR DQDETDADDI NSYECQQCNL TFHGQSAYAH HLITFHKMGS 540 KRRKINKVGK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS 600 GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA SEARSQHHNC STKHGGNSTR GIDLFNSNCP 660 ANFNGHNQTW CRPDEIPPTT DAPSTWTYRN NVTNCADRTV PRTAPQPNDH MDCRVSGFAE 720 ATNFNDQAGR HQGFRPSSFG TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI 780 SFPIATANNE TSTALNDVNR SCITGKGFSG SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD 840 RSSIAARSFN AGYVNENGAS EANNIGNKNN TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL 900 PGYGELRPAA SGSPQLGGMA ANSSIPTRPS QPQFGSMART DALPTGPSQP GSLARPNFVP 960 TGFSQFASRP PTSVPPADSS QFAGGMARQN IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS 1020 LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ QSGSFGFICP ACKEKMSGNP NAPNNAVRVY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 191 | GGRRRRGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069097 | 0.0 | AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650380.1 | 0.0 | uncharacterized protein LOC4345880 isoform X1 | ||||
TrEMBL | A0A0E0IDJ1 | 0.0 | A0A0E0IDJ1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G20630.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |