PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G20630.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1080aa MW: 115224 Da PI: 7.7942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G20630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	562	584	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + H +H ONIVA08G20630.1 562 FECPVCNKTFEEQSRYFGHVGSH 584 89************999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.023	387	460	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	8.5E-7	391	442	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	5.9E-4	392	441	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	2.6E-5	397	440	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF57667	9.34E-5	512	584	No hit	No description
SMART	SM00355	0.41	513	536	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	515	536	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.328	562	589	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	562	584	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	564	584	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence Send to blast
MPSSSPAGGA LALPLPSSVA EGALGLGRER GGGGSSCFVR ETRFVVPTAV VDEASMEPFV 60 CSGDAHMVLP APVVELTKYS QPNLIMNPRS SEPEASNKET TTIHKVCCRS PPPFILSPTP 120 MPLPPAIPSS PSLPAATMFQ NKELTPTQLR RRHLIPPASD TVASHRSSDR RSGGRLAGEE 180 AAWGGRRRRG GGGGAMETEV FPVVDLRVLS QSDLDALAAA SAHAVAPGGS CPDADQLPPL 240 KIDRAVFNES AGSRKQTFSR VRFGAAAAVA ASPSSPSPSA AAKLPRGNDK EDSFIAYHLR 300 RLFAPDDPSS PQTQTLALPA PPSPDPDQLT TNSKGVSVDL VSLSRLADPY DAELGKRTAG 360 MTTEEELMGF ISSLAGQWVS QRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS 420 YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT 480 GMDSQSILPV ASITFSSHSR DQDETDADDI NSYECQQCNL TFHGQSAYAH HLITFHKMGS 540 KRRKINKVGK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS 600 GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA SEARSQHHNC STKHGGNSTR GIDLFNSNCP 660 ANFNGHNQTW CRPDEIPPTT DAPSTWTYRN NVTNCADRTV PRTAPQPNDH MDCRVSGFAE 720 ATNFNDQAGR HQGFRPSSFG TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI 780 SFPIATANNE TSTALNDVNR SCITGKGFSG SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD 840 RSSIAARSFN AGYVNENGAS EANNIGNKNN TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL 900 PGYGELRPAA SGSPQLGGMA ANSSIPTRPS QPQFGSMART DALPTGPSQP GSLARPNFVP 960 TGFSQFASRP PTSVPPADSS QFAGGMARQN IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS 1020 LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ QSGSFGFICP ACKEKMSGNP NAPNNAVRVY

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence Send to blast

MPSSSPAGGA LALPLPSSVA EGALGLGRER GGGGSSCFVR ETRFVVPTAV VDEASMEPFV  60
CSGDAHMVLP APVVELTKYS QPNLIMNPRS SEPEASNKET TTIHKVCCRS PPPFILSPTP  120
MPLPPAIPSS PSLPAATMFQ NKELTPTQLR RRHLIPPASD TVASHRSSDR RSGGRLAGEE  180
AAWGGRRRRG GGGGAMETEV FPVVDLRVLS QSDLDALAAA SAHAVAPGGS CPDADQLPPL  240
KIDRAVFNES AGSRKQTFSR VRFGAAAAVA ASPSSPSPSA AAKLPRGNDK EDSFIAYHLR  300
RLFAPDDPSS PQTQTLALPA PPSPDPDQLT TNSKGVSVDL VSLSRLADPY DAELGKRTAG  360
MTTEEELMGF ISSLAGQWVS QRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS  420
YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT  480
GMDSQSILPV ASITFSSHSR DQDETDADDI NSYECQQCNL TFHGQSAYAH HLITFHKMGS  540
KRRKINKVGK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS  600
GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA SEARSQHHNC STKHGGNSTR GIDLFNSNCP  660
ANFNGHNQTW CRPDEIPPTT DAPSTWTYRN NVTNCADRTV PRTAPQPNDH MDCRVSGFAE  720
ATNFNDQAGR HQGFRPSSFG TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI  780
SFPIATANNE TSTALNDVNR SCITGKGFSG SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD  840
RSSIAARSFN AGYVNENGAS EANNIGNKNN TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL  900
PGYGELRPAA SGSPQLGGMA ANSSIPTRPS QPQFGSMART DALPTGPSQP GSLARPNFVP  960
TGFSQFASRP PTSVPPADSS QFAGGMARQN IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS  1020
LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ QSGSFGFICP ACKEKMSGNP NAPNNAVRVY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	GGRRRRGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069097	0.0	AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650380.1	0.0	uncharacterized protein LOC4345880 isoform X1
TrEMBL	A0A0E0IDJ1	0.0	A0A0E0IDJ1_ORYNI; Uncharacterized protein
STRING	ONIVA08G20630.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19