PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G19830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 366aa MW: 37806.5 Da PI: 8.4296 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.3 | 1.1e-15 | 291 | 334 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ONIVA08G19830.1 291 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKK 334 79***************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-12 | 287 | 353 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.944 | 289 | 334 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-11 | 291 | 334 | No hit | No description |
CDD | cd14707 | 5.84E-24 | 291 | 337 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-15 | 291 | 334 | No hit | No description |
Pfam | PF00170 | 7.1E-13 | 291 | 334 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 294 | 309 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MDLKDGGGSE RRGAAAGAGA GAAPLARQGS IYSLTFDEFQ STLGGMGGGL GKDFGSMNMD 60 ELLRSIWTAE ESQAMASASA SAAAAAAEGG LQRQGSLTLP RTLSVKTVDE VWRDFEREAS 120 PGAAAADGGG GGGGEQQQPR RQPTLGEMTL EEFLVRAGVV RENTAAAAAM VAAAAAPPVA 180 PRSIPAVNNS SIFFGNYGGV NDAAAAAAGA MGFSPVGIGD PTMGNGLMSG VAGIGGGAIT 240 VAPVDTSVGH MDSAGKGDGD LSSPMAPVPY PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR 300 ESAARSRARK QAYTMELEAE VQKLKEQNME LQKKQVLEAV NNPYGQKKRC LRRTLTGPWN 360 VGEIHI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004457 | 0.0 | AP004457.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0013B04. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650926.1 | 0.0 | bZIP transcription factor TRAB1 | ||||
Swissprot | Q6ZDF3 | 0.0 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | A0A0E0ID92 | 0.0 | A0A0E0ID92_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G19830.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41070.3 | 4e-36 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|