PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G18470.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 25980.7 Da    PI: 4.6227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G18470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-172675255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  ONIVA08G18470.1 26 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 75
                     7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-262687IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-182686IPR016177DNA-binding domain
SMARTSM003804.5E-312691IPR001471AP2/ERF domain
PfamPF008473.0E-102675IPR001471AP2/ERF domain
PROSITE profilePS5103221.972685IPR001471AP2/ERF domain
CDDcd000182.87E-172687No hitNo description
PRINTSPR003671.6E-82738IPR001471AP2/ERF domain
PRINTSPR003671.6E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDHIGISGVG EGGVVSPAQP SSPERRYKGV RLRKWGRWVS EIRMPNSRER IWLGSYESAE  60
KAARAFDAAA VCLRGSRGAG SLNFPESPPP DVRRRFPGAA LTVEQIQAEA ARHANRRFPA  120
NTAAAGGSSS YSISQRQEAA APARSTSNDD TAMSSVPSTD GGAADYDGGD DVIDWSFMDT  180
LPAMSSSAAS TNADLVPAMD DFMYGFLHTM PPSPCEDGGE DVMIDGNCNM DQTFFSVDLW  240
RF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649307.11e-150ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0ICU01e-176A0A0E0ICU0_ORYNI; Uncharacterized protein
STRINGONIVA08G18470.11e-177(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-24ERF family protein