PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G10560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 21749.8 Da PI: 10.8608 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H ONIVA08G10560.1 145 FKCSVCGRSFSSYQALGGHKTSH 167 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.96E-6 | 144 | 171 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 145 | 172 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.8E-12 | 145 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0081 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MIRENRGPTC QRGHVSTLSL FPLLSLPPLS LSLFSASRPV AGAKAARVRR RRQVANGETE 60 ALHAAVLKEE EQQHEVEEAA VVTSSSATSG EEGGHLPQGW AKRKRSRRQR SEEENLALCL 120 LMLALGGHHR VQAPPPLSAP VGAEFKCSVC GRSFSSYQAL GGHKTSHRFK LPTPPASPVL 180 APASSEVQSP LAFSPRNSAA ARI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649250.1 | 1e-118 | zinc finger protein 1, partial | ||||
Swissprot | Q42430 | 1e-36 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0I9Z0 | 1e-141 | A0A0E0I9Z0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G10560.1 | 1e-142 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 7e-10 | zinc-finger protein 1 |