PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G05240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 706aa MW: 74551.7 Da PI: 3.8305 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.6 | 1.4e-24 | 9 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....d 89 lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L + +++ ++ +fF++++ k+ +g+r++r + gyW+ + + ONIVA07G05240.1 9 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFAEARAKNGKGSRQKRtVEGGGYWQGQRMcvdgE 101 79****************************99***************744.4566799******************555599**9776544323 PP NAM 90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v + e + k +L ++ ++ +kg ++ Wvmhey++ ONIVA07G05240.1 102 RLV--VpdgggggGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 143 333..2357776333346677778888.556665.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-32 | 4 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.779 | 9 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-15 | 10 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MAAAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG 60 RGDDAFFFAE ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGG GGGVEIAWRK 120 YVLSYFADGE KGSSGWVMHE YAITAPADLA SSTMRLYRIR FSGHGKKRKR EPESQSDNHQ 180 IAVAETAMLE DSAPPPQPVH PPAAMVNCVS DDTDQGFSGA VPPPAPVVHH TNDSDVTDRY 240 SSLVFSDQPG SIYEDELQSF VPEFPARNLF VSLPEGSHEA EPAQSVSSLA DVGGPENMDD 300 QSCSGVVFAN LPELIVLPSA PSLDNQNDEA PVFFEFPESM DDIVGCFDFA AMDNQSCTSA 360 IPEEPFLPPA AMVNHDDGYA SNNADQGCSG AVPLPAAVVD LPNETDGADQ SCSGVGDNST 420 LLFSDVTGSI DEDELQSFVP EFAASNLFVS LPQGSCEADA EADSGGGVAP AQFAEFGGSE 480 SMDDSSMMYP LNFPAEAGGG GGRAAPASSW VSSQHNQNDE APMFFELPES LDDMVGCFDF 540 AAMDGQSCTS AVSETALIEE LVLPPAAMVN HHDDSVSDIA DHGCSGSVPP PSAVVDLPND 600 SDQSCSGYYE AELKVPLEYA ARNPVDSPAK GGNEAEVDAS NGAGSMMSSP DKQKEHSSSG 660 VMDVEATGFG VPDSMDSLSC IDFAETMDDL SCIDFTIDDE LFDLWS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003848 | 0.0 | AP003848.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1715_A07. | |||
GenBank | AP004379 | 0.0 | AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0HXW5 | 0.0 | A0A0E0HXW5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G05240.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-14 | NAC domain containing protein 47 |