PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G05170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 664aa MW: 69927.9 Da PI: 3.8647 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.3 | 8.5e-25 | 9 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....d 89 lppG++F+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L + +++ ++ +fF+ ++ k+ +g+r++r + gyW+ + + ONIVA07G05170.1 9 LPPGLKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFADARAKNGKGSRQKRtVEGGGYWQGQRMcvdgE 101 79****************************99***************744.4566799******************555599***776544334 PP NAM 90 kevlskkgel.vglkktLvfykgrapkgektdWvmheyrl 128 + v+ +g + + k +L ++ ++ +kg ++ Wvmhey++ ONIVA07G05170.1 102 RLVVPDGGVEiAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 139 555555555515555667777.566665.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-33 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.139 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-15 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MASAAGDGLP PGLKFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG 60 RGDDAFFFAD ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGV EIAWRKYVLS 120 YFADGEKGSS GWVMHEYAIT TPADLASSTM RLYRIRFSGH GKKRKREPES QSAHHDDGRA 180 RCAPQIAMPE TALLEDSAPP PQPVLPPAAV VNSVSDGAVP PPAPVVNCDS DVTDEDELQS 240 FVPEFSARNL FVSLPQGSHE AEADVVGGAL PAQSMSSFAD VGGPENMDDQ SCSGVVFANL 300 SDLIVLPPVE ASGAAPAPSW ASSLDNQNDE APVFFEFPES MDDIVGCFDF ATMDDPSCTS 360 AISEEPFLPP AAMVNHDDGY ASDNADQGCS GAVPLPSAVV DLPNETDGAD QSCSGVVDDS 420 SMVFANIHPL DSPAEGGHEA EAGAGGGRAA PAPSWVSSLD NQNDEAPMFF ELPESLDDMV 480 SCFDFAAMDG QSCTSAVSET ALIEELVLPP AAMVNHHDDS VSDIADHGCS DAVPPPSAVV 540 DLPDDSDGAD QSCSGMVDDS LPGYYEAELK VPLEYAARNP VDSPSKGGHD HEAEVDASGG 600 AGSMMSSPDK EKEHSSSGVM DVEATGFGVP DSMDGLSCID FAETMDDLSC IDFTIDDELF 660 YLWS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003848 | 0.0 | AP003848.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1715_A07. | |||
GenBank | AP004379 | 0.0 | AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638590.1 | 1e-105 | uncharacterized protein LOC107275325 | ||||
TrEMBL | A0A0E0HXV3 | 0.0 | A0A0E0HXV3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G05170.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 8e-12 | NAC domain containing protein 47 |