PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G24670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 397aa    MW: 42817.5 Da    PI: 7.6627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G24670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05226245120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  ONIVA06G24670.1 226 FSCPVCYKTFNRYNNMQMHM 245
                      89*****************9 PP
2zf-C2H214.10.00014310332123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  ONIVA06G24670.1 310 FMCRKCGKAFAVRGDWRTHEKNC 332
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014479.68E-52534No hitNo description
SuperFamilySSF576678.09E-5222248No hitNo description
SMARTSM003550.45226248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-6226245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743226253IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-6294330No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5306330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549310330IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808310330IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE  60
ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DGKRESPSAA  120
AAADDQAAEV TVALHIGLPS PSPSDAAAAA GNQAAAAAAA AEASAAGGGS SRMQVEEEGG  180
EEEDEDEAAA TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN  240
MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH  300
YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG  360
HAACGIDSFD DLDADDDPSS DLDHASASAS ASASRVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642156.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0HTF40.0A0A0E0HTF4_ORYNI; Uncharacterized protein
STRINGONIVA06G24670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]