PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G07230.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 379aa    MW: 40495.5 Da    PI: 6.9071
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G07230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-131458755
              AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     r++k  g+WvAeIr p++   rkr++lg+++++e+Aa+a +aa  +l+g
  ONIVA06G07230.1 14 RRYK-GGKWVAEIRLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 58
                     5666.8*********933...5*********************999998 PP
2AP252.61.1e-16198247255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr +  +g+W+AeIr ps+   r+r +lg+++t+e+Aa+a +aa  +l+g
  ONIVA06G07230.1 198 KYKGVRLRQ-WGKWAAEIRLPSS---RRRTWLGSYDTPEKAARAFDAAFICLRG 247
                      8*****998.**********965...4*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.228168IPR001471AP2/ERF domain
SMARTSM003801.4E-211474IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-141469IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-191470IPR001471AP2/ERF domain
CDDcd000181.16E-191470No hitNo description
PfamPF008471.3E-61558IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-25197258IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-18198259IPR016177DNA-binding domain
SMARTSM003807.2E-30198263IPR001471AP2/ERF domain
PfamPF008471.3E-9198247IPR001471AP2/ERF domain
PROSITE profilePS5103222.194198257IPR001471AP2/ERF domain
CDDcd000183.75E-23198256No hitNo description
PRINTSPR003674.3E-8199210IPR001471AP2/ERF domain
PRINTSPR003674.3E-8221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQASTTQPAP EKERRYKGGK WVAEIRLPNS RKRIWLGSYD SPEKAARAFD AAFICLRGGE  60
AITGLNFPES PSAVVARTTD PREVLAFATS HACQSAVVVG CRHCARRRSS GGGGDRLRSP  120
QTWANAAPPP PVQVAGGSFD LSQLPLYSPM TTPAIEHWEK DNVEGDIPVG SEMFVETSSN  180
SIYIGAKSAA QAAAEMRKYK GVRLRQWGKW AAEIRLPSSR RRTWLGSYDT PEKAARAFDA  240
AFICLRGVQA IAGLNFPVSP PPPPSATART GDLREVYTFA VSHANQPSAE APAAIVVPAQ  300
VATADSDPDD AVRGNVTPPP VQVAAGSLDW SQFMANPPPM YSPTATAGSQ AMWPVTAPAA  360
ESDGEDDELA TTCLWSFDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13193257972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.17e-50ethylene-responsive transcription factor ERF018-like
SwissprotQ84QC21e-24ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0HM660.0A0A0E0HM66_ORYNI; Uncharacterized protein
STRINGONIVA06G07230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]