PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G15000.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 577aa    MW: 59858.4 Da    PI: 7.8031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G15000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.39e-711745754374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkf 93 
                       L +cAea++++  + a+a La +  +as dgd++qR+aa f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l +
  ONIVA05G15000.1 174 HLRRCAEALAASRPADADAELASIARMASADGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLHL 267
                      6889*********************************************************66666544346767778888999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++++
  ONIVA05G15000.1 268 AAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-VESSV 356
                      ****************************************98867799*********....99************************9.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                      e+l+l++L v+++ a+++ + lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +sF +
  ONIVA05G15000.1 357 EALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILIENEANHFVPSFTD 450
                      **************************************************9987788888899******************************* PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvks 346
                      rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ ++ ++
  ONIVA05G15000.1 451 RFASALPYYEQLFAAMEEA-GAATVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAARLPG 543
                      ****************887.78999*********************9988********************988765511445555666666654 PP

             GRAS 347 dg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       g    y v e  g+l+l  +++p++ vSaWr
  ONIVA05G15000.1 544 GGderrYGVTEGGGWLILNREEKPMFCVSAWR 575
                      334566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.062145549IPR005202Transcription factor GRAS
PfamPF035143.1E-68174575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEKGSSSTPS AANTSELMVA QAATAAATTT AAATTAAVPM TNFQLFGSMV PVPVASMATA  60
TAPAAVAAAD NGGHGSSSAS QNASGSGEGQ GGSMSLSLQL RPLGSTPTAA VAVSVPPMAA  120
APMMAGPAAA APAPAPPLAT MAVAQNASLA AVASALAAHR RNQATHRSAA LHGHLRRCAE  180
ALAASRPADA DAELASIARM ASADGDAVQR VAAAFAEAMA RVVIRPWRGV SAALFPSDAG  240
AAGDALTAWE AEFARQSFLN LCPLLHLAAV AVNEIILETT RNDKFIHIVD LGGIHHAHWV  300
ELLQGLATRR AAVRPCLRLT IVHEHKHFLG QAAQVLAAES DRHGVPLDLH IVESSVEALK  360
LDALGVRSDH AVVIVSTLQL HRLVGAGILS TTAPPSPAAA AAASMITSPL PPANMSSKVD  420
RLLRGFHLLS PRAIILIENE ANHFVPSFTD RFASALPYYE QLFAAMEEAG AATVERKAAE  480
RYLLREEIKD VIACDHDGPR WARHETLGRW VVRMGAAGFA LAPAITVVTA AGRVRAVAAR  540
LPGGGDERRY GVTEGGGWLI LNREEKPMFC VSAWRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-261685751375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLA0A0E0HDP70.0A0A0E0HDP7_ORYNI; Uncharacterized protein
STRINGONIVA05G15000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-31scarecrow-like 3