PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G29050.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 689aa    MW: 72648 Da    PI: 4.8613
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G29050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.77e-3283184291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                      fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+            + + rrtra+tr+gCka+++vkk+++g+w vtkle+
  ONIVA03G29050.1  83 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLET 176
                      ********************************************************99999********************************* PP

             FAR1  84 eHnHelap 91 
                       HnH+l+p
  ONIVA03G29050.1 177 AHNHPLVP 184
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-3083184IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MERGGGGGGG GGGGVMGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA  60
GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG  120
FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH  180
PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPVP QTSELVNCIN  240
MPETIDEFEV NFKALISKVG PGNSEWLYSV YNCRQHWVPV YLRDTFFGDE SSKEDLCREA  300
LRYAEEGASS VEVYIVAMQA LQEAANKVNM AKRGIGQVAP NAPLAVMPIA AQLPAEGFRN  360
VPEISFNQRK KRKRNSNNKT TENSSNQLMY LQQPVNFLFV APGTSSGPQG PSQIVAAVPV  420
SSSAPHGQTS SANHPSDGNT TSCSVAAQKN SDLSNYSGSA PSLGNVVPEG EIKSSGFASQ  480
IKESHELSQG NGNKGNNVNM ASSTSSPQLV TVPVGLCLPS MDSSKISADA INSTNSGSMI  540
SNGNVSFGLC QSQSTNADPR STPEGSSIRA AAIAAGARIA SPSDAASIIK AAQSKGAIHI  600
RPGEGVPNYL KPLAPQPLSS LPPGSIPNSV HPSSSHAQPG QCSFGDSAAA KDAIFGSTDS  660
SDDDEYDEDD DTDDNDEDEG ITGDEVEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373RKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200580.0AK120058.1 Oryza sativa Japonica Group cDNA clone:J013001C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631605.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0E0GR780.0A0A0E0GR78_ORYNI; Uncharacterized protein
STRINGONIVA03G29050.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-26FAR1-related sequence 5