PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G38660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 445aa    MW: 47417.8 Da    PI: 5.9244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G38660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.93.5e-13372395226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r G C+yG+rC+FaHg
  ONIVA02G38660.1 372 KTELCNKWER-GACPYGARCRFAHG 395
                      8*********.*************9 PP
2zf-CCCH18.53.6e-06408434127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  ONIVA02G38660.1 408 YKTLPCQMFAAASGCPYGHRCHFRHSP 434
                      9***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-16366402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079370397IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8370396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8370401IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10372395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-10403434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7404433IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4407434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746407435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPARA  60
SSPLQKQIPD CRDAGDFSSL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS  120
PPTCVSDNRG VGNGGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK  180
PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS  240
DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY  300
LSQKQPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE  360
VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS  420
GCPYGHRCHF RHSPLRAAAA ESFCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-173724341174Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0GEB60.0A0A0E0GEB6_ORYNI; Uncharacterized protein
STRINGONIVA02G38660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-32C3H family protein