PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G13670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 512aa    MW: 54808.7 Da    PI: 10.21
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G13670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.21.1e-13141230798
           DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      w+ +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  ONIVA02G13670.1 141 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 230
                      **************999999954..699***********98865538***********************9965.567889**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-19141229IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRRRRRRRRT PTLTPTPKLR KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK  60
KRAAPEPAPS GKAKKAKPEK SSSAAAPEPA PSLGKSKKAA KAEAAKAAAA EPAPSTGKVR  120
KSKLAPEPSP SSKSGKALSR WTTDDEVKIL EVLVAHFKSH GTQLNVEGII AAVGDSLERK  180
SIKYSDMYEK VRRLKQRYEA TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NTKDAGNSSK  240
NKKGQAKKDK VSGDSKEAAK EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS  300
KEAALAASPT KGKKKGSHKD KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD  360
GDTHIVMPKE ATTTAASDDG TLVGSKKGKA DNGKLDGDTR SVMPKEATAG TQNGGILTGG  420
ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC  480
TLESKIKKQK IAEVRMQLRL ADTKKEVANA LE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118RRRRRRRR
228RRRRRRR
349RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLA0A0E0G4Z40.0A0A0E0G4Z4_ORYNI; Uncharacterized protein
STRINGONIVA02G13670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737