PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G16070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 548aa    MW: 57886.6 Da    PI: 6.8209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G16070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-21106226186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkr 60 
                      +Wt+ +v++Li+++ +++++    +                                  +kk++W++vs++m+e g  +sp+qC++k+++lnkr
  ONIVA01G16070.1 106 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKR 199
                      69999999999998855555443222233444455555555556666666666666666*********************************** PP

         trihelix  61 ykkikegekkr.tsessstcpyfdqle 86 
                      yk++ +  +++ +++++++++++d ++
  ONIVA01G16070.1 200 YKRVVDLLGRGkACKVVENHALLDAMD 226
                      *********9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-17104252No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GGFQQQVAAV RQQQQQSYSP  60
YSAGASSRVI KAPGHDDGMG NGAGKGGVVQ QQQQPGSAGC PWTRMKWTDG MVRLLINVVY  120
SVGDDGDGVA AGGAAGGKAS AGAAGHGKAG GSGSHGAHGQ AAAQQKKGKW KSVSRAMMES  180
GHMVSPQQCE DKFNDLNKRY KRVVDLLGRG KACKVVENHA LLDAMDELTH KAKDEARKLL  240
SSKHLFFREM CAYHNSGAAA AAAAHGPHGA GAAGVEATAC FHHPPPASMA AASSAARQAA  300
AAAPSLGMKD SSAGPEDDED DSEDVPSSNE VDDDDDDDDD DDDEVGPGMK SRRIYGGHRV  360
HHHHHHHNGH HKRRRGDDVS SAGAGDDDDE DGVKRARGAA SAAGGGDDEG PSAVQQLQSE  420
LAAAVAGGGD PQQVRQWVRR RTVEVEEQQV AHEVRAYHLE RQRLKWERFR ANKERDMERA  480
RLRNDRLRID GRRMLLLLRQ KDLDFDIAEA NSSSVDHLTS SAPPPLAALQ QQQQPLGSSP  540
STAAGHPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034140.0AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039210.0AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.10.0sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLA0A0E0FL050.0A0A0E0FL05_ORYNI; Uncharacterized protein
STRINGONIVA01G16070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-43sequence-specific DNA binding transcription factors