PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G12770.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 550aa MW: 59862.6 Da PI: 4.6833

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G12770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.7e-40	163	222	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s ONIVA01G12770.1 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 222 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	160	220	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	165	221	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	167	221	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	169	205	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPEAAAAAA EVEPAAQDED HHKETEERKD 60 DEMKVDVPQE EEDNEMKVDA PQEKKDNEVT ADVPEEKGND EMRVDASESI ESIEPVSRST 120 LDNKKEDQGQ MNNVEEKAAS DSKDENEKTA NDESGQDKVL KKPDKILPCP RCNSMDTKFC 180 YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGSR 240 VEISKSMNPE AFASAHSTPI QPIGRNETVL KFGPEVPLCE SMASVLNIQE QNGTNAAAVP 300 TGENQEDNSC ISSITSHNVL PENAAQVDKN STPVYCNGVG PVPQYYLGAP YMYPWNIGWN 360 NVPMMVPGTS MPESASQSES CSTSSAPWMN MNSPMMPVAS RLSAPPFPYP LVPPALWGCL 420 SSWPATAWNI PWIRTNGGCM SPSSSSNSSC SGNGSPLGKH SRDSSLPLKE DKEEKSLWIP 480 KTLRIDDPDE AAKSSIWATL GIKPGDPGIF KPFQSKGESK GQAASETRPA RALKANPAAL 540 SRSQSFQETS

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPEAAAAAA EVEPAAQDED HHKETEERKD  60
DEMKVDVPQE EEDNEMKVDA PQEKKDNEVT ADVPEEKGND EMRVDASESI ESIEPVSRST  120
LDNKKEDQGQ MNNVEEKAAS DSKDENEKTA NDESGQDKVL KKPDKILPCP RCNSMDTKFC  180
YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGSR  240
VEISKSMNPE AFASAHSTPI QPIGRNETVL KFGPEVPLCE SMASVLNIQE QNGTNAAAVP  300
TGENQEDNSC ISSITSHNVL PENAAQVDKN STPVYCNGVG PVPQYYLGAP YMYPWNIGWN  360
NVPMMVPGTS MPESASQSES CSTSSAPWMN MNSPMMPVAS RLSAPPFPYP LVPPALWGCL  420
SSWPATAWNI PWIRTNGGCM SPSSSSNSSC SGNGSPLGKH SRDSSLPLKE DKEEKSLWIP  480
KTLRIDDPDE AAKSSIWATL GIKPGDPGIF KPFQSKGESK GQAASETRPA RALKANPAAL  540
SRSQSFQETS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618265.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0FJQ8	0.0	A0A0E0FJQ8_ORYNI; Uncharacterized protein
STRING	ONIVA01G12770.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-70	cycling DOF factor 2