PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G15000.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 317aa    MW: 32754.7 Da    PI: 8.2506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G15000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15167213455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OMERI12G15000.1 167 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 213
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18167230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-20167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-13168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-15168217No hitNo description
SMARTSM003534.2E-17169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DSTAAAAAAY ATDVAGDAFP SLQALRNASA AGGGGGGFRD  60
LTVQVDQVHR ANSWSSSDSP GGGAATAAAG WSPHVTGGGG RGHRPMSWNF SAASAQPTTE  120
DSGGGGGGGV VPAPPQAMET TATARAAVKK GGGGSSSSAA APGYVQDHII AERRRREKIN  180
QRFIELSTVI PGLKKMDKAT ILGDAVKYVK ELQEKVKTLE EEADGGRAAM VVRKSSCSGR  240
QSAGGDGDGG TTTARMPEME VRVWERSVLV RVQCGNARGL LVRLLSEVEE LRLAITHTSV  300
MPFPASTVII TITAKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-15167222863Transcription factor MYC2
5gnj_B2e-15167222863Transcription factor MYC2
5gnj_E2e-15167222863Transcription factor MYC2
5gnj_F2e-15167222863Transcription factor MYC2
5gnj_G2e-15167222863Transcription factor MYC2
5gnj_I2e-15167222863Transcription factor MYC2
5gnj_M2e-15167222863Transcription factor MYC2
5gnj_N2e-15167222863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERRRRE
2172177RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139050.0AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318870.0AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618734.11e-165transcription factor NAI1 isoform X1
RefseqXP_015618735.11e-165transcription factor NAI1 isoform X2
RefseqXP_025877790.11e-165transcription factor NAI1 isoform X1
RefseqXP_025877791.11e-165transcription factor NAI1 isoform X1
TrEMBLA0A0E0FET40.0A0A0E0FET4_9ORYZ; Uncharacterized protein
STRINGOMERI12G15090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-32bHLH family protein