PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G12010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 162aa    MW: 18375.9 Da    PI: 7.6099
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G12010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.4e-08337165200
             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                      L k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gE
  OMERI11G12010.1   3 LMKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGE 37 
                      8899************.7****************99 PP
2GRAS88.31.2e-2755161235351
             GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                      sPkv+vv+eqea+hn++ + erf+eal+yy+alfd le++++r s e + vEr llg+ei+n+      +    he+le+W +rle aGF+ +p
  OMERI11G12010.1  55 SPKVMVVTEQEASHNAALLTERFVEALNYYAALFDGLEVGAARGSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRIP 138
                      8*************************************************************8......4....89999*************** PP

             GRAS 329 lsekaakqaklllrkvksdgyrv 351
                      ls++a  qa+++ +    dg++v
  OMERI11G12010.1 139 LSYYALLQARRVAQGLRCDGFKV 161
                      *********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.0741162IPR005202Transcription factor GRAS
PfamPF035141.5E-5337IPR005202Transcription factor GRAS
PfamPF035144.3E-2555161IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MALMKEAERL DVPFQFNPVV SRLDALDVES LRVKTGERRS QESGLSPSTS RADASPKVMV  60
VTEQEASHNA ALLTERFVEA LNYYAALFDG LEVGAARGSV EHTRVERWLL GEEIMNIWHE  120
RLERWVRRLE GAGFGRIPLS YYALLQARRV AQGLRCDGFK VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-167161183356Protein SCARECROW
5b3h_A2e-167161182355Protein SCARECROW
5b3h_D2e-167161182355Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241511e-126AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence.
GenBankAP0149671e-126AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.15e-82scarecrow-like protein 3
RefseqXP_025819416.15e-82scarecrow-like protein 3
SwissprotQ9LPR81e-33SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0E0F6101e-114A0A0E0F610_9ORYZ; Uncharacterized protein
STRINGOMERI11G11720.11e-114(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-36scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]