PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G10380.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 457aa MW: 47004 Da PI: 7.621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G10380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	275	330	10	55
HHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 r RR++i +++ L++l+P + + Ka +L + ++Y++sLq OMERI11G10380.1 275 RVRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 330 88******************777877776664333333668888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.839	265	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-5	271	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-10	275	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-10	275	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.42E-8	275	334	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGGMHEAALM 60 DELASRLGGV CGGGLGGGGV PSPPSSSRYA SCYSTPVGSP CKPAPAPPAP SLLAARMSCL 120 AAGGHGGGKL SRAASSQSLL AEPASAGGVH QLPASDGSSS DAPSRKRKAP VAKSRGKDAA 180 TAIAKSPEPG TKAKKCKLSA DAAGDEDTKP VAGDAGHGGN GKGKVLDAAG EPPKDYIHVR 240 ARRGQATDSH SLAERVNAAG VDAAIHNFFF LFNSRVRREK ISERMKLLQD LVPGCNKVAK 300 FSQKINLNFT LVTGKAVMLD EIINYVQSLQ RQVEFLSMKL STVNPQLDFD VDNFIPKDQA 360 NDPSMPAPLS LPPPPPSLSY SPEGASPAIC YASSQGTAMQ SVVTSTKHLE TAPTFANHHI 420 IPVPSLDGFH SAHSQAGSCM WEDDLQSVVQ MGFRGNT

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGGMHEAALM  60
DELASRLGGV CGGGLGGGGV PSPPSSSRYA SCYSTPVGSP CKPAPAPPAP SLLAARMSCL  120
AAGGHGGGKL SRAASSQSLL AEPASAGGVH QLPASDGSSS DAPSRKRKAP VAKSRGKDAA  180
TAIAKSPEPG TKAKKCKLSA DAAGDEDTKP VAGDAGHGGN GKGKVLDAAG EPPKDYIHVR  240
ARRGQATDSH SLAERVNAAG VDAAIHNFFF LFNSRVRREK ISERMKLLQD LVPGCNKVAK  300
FSQKINLNFT LVTGKAVMLD EIINYVQSLQ RQVEFLSMKL STVNPQLDFD VDNFIPKDQA  360
NDPSMPAPLS LPPPPPSLSY SPEGASPAIC YASSQGTAMQ SVVTSTKHLE TAPTFANHHI  420
IPVPSLDGFH SAHSQAGSCM WEDDLQSVVQ MGFRGNT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-170	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615632.1	0.0	transcription factor BHLH089-like isoform X1
TrEMBL	A0A0E0F5D7	0.0	A0A0E0F5D7_9ORYZ; Uncharacterized protein
STRING	ORGLA11G0103900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13313	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-45	bHLH family protein